Scaffold Ga0208183_1066466

Overview

Basic Information

• Taxon OID: 3300025274
• Scaffold ID: Ga0208183_1066466
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 696
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.47
  • Long. (^o): 11.53
  • Depth (m): 3514

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007012	Metagenome	360	Y
F075977	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208183_10664661	F007012	N/A	FICHRCNTKVECETKAEMICDCGAYIKDHDDTRNYVNMGKTWSKTTKVEFNHTTMDKDIAERNSR
Ga0208183_10664662	F075977	AGGA	MAFDTQITDLVGGTIDQVACDQWAADACKEIINQLPANLKAKCAAATTLNNSTTVMDMDAVGDILHVTRLSANSGGYQVPCREIPSQYGGLATDSTDLNYYGTASDPVYWIDGNTSDAATLYVKPTPEATQTAVVYHITYPTVDVDSDSVIANFPDEAEHLVVLY