NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208183_1018393

Scaffold Ga0208183_1018393


Overview

Basic Information
Taxon OID3300025274 Open in IMG/M
Scaffold IDGa0208183_1018393 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1612
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.47Long. (o)11.53Alt. (m)Depth (m)3514
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043987Metagenome / Metatranscriptome155Y
F054107Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0208183_10183931F054107GAGMVKEKRKIHSEKVEPKVNAAAGNFVQAVQTGLTEMNKRLQDMEQKVQEKDKLLNDMAMALKSQQDVLANTPPQEVPGSEAERNQPMTKGDFFQVIKDGIQLLRQQTAAPDPRIERAIDMQDKLVDAMWEKMARALISDKDAAPGVN
Ga0208183_10183934F043987GGAGMNKNYLKVPAEHFWILSKREKSQLLAELKRRAEVLE

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