Scaffold Ga0208813_1076194

Overview

Basic Information

• Taxon OID: 3300025270
• Scaffold ID: Ga0208813_1076194
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 698
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.49
  • Long. (^o): 7.9
  • Depth (m): 2455

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000929	Metagenome / Metatranscriptome	830	Y
F034956	Metagenome / Metatranscriptome	173	Y
F080156	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208813_10761941	F000929	N/A	NGTQLNKSLSVGHIVATVGLIIGGFTFIYDLRESVAIQSFQLGTVEDRLERVVARTDDQFGEIMDHLIRLEEKLDAIVLPSSTYKRPR
Ga0208813_10761942	F034956	GGA	MVHIQMKCTHLQIVKESYGNHLRFTLQLSFDLFLLAIVSIIHGLCPWILTGKVSDRVKELNVLLNERWLNPK
Ga0208813_10761943	F080156	N/A	MNIDAKFFGILIFLVSQTAAGIWWAASLSSEVERLAGIQGTSIPSIE