Scaffold Ga0208813_1023474

Overview

Basic Information

• Taxon OID: 3300025270
• Scaffold ID: Ga0208813_1023474
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1517
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.49
  • Long. (^o): 7.9
  • Depth (m): 2455

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010273	Metagenome / Metatranscriptome	306	Y
F076175	Metagenome	118	N
F103402	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208813_10234741	F076175	AGGA	MILEALKGLAALPKLVEAVERIGDKLDDKAALERLGEKRDRNRAAVDGVLVAASGQRGEDDSSPAVSGGDTGGS
Ga0208813_10234742	F010273	N/A	MKDKLKSRKLWMAIGGLLTVMATEWFNLSPELSEQVIGAVIIIVPAYVGSQSIVDAMKEYAAKK
Ga0208813_10234744	F103402	AGGA	MANTYKWSRLEAVVKDEDDLSNVVVDLVCGMTGTDGEYPVYIDTMHKLPAPDPDNFIPFEDLTQEWAVEIADTVAEERGFRASLDKQIEAAKVRPTSKPFAWQQPAPSG