Scaffold Ga0208179_1017858

Overview

Basic Information

• Taxon OID: 3300025267
• Scaffold ID: Ga0208179_1017858
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2015
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029400	Metagenome	188	Y
F073421	Metagenome	120	Y
F081216	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_10178581	F081216	GGAG	MNFQVGDLITLKHHRGNPDAPPPLAIVVSLAAYCLDRIMIQHRGTSGPEMAAPEHW
Ga0208179_10178583	F029400	GGAGG	VKIGDLVTFCPEAWGTPLEDRPLGVIMNVEKRWHPDGEMMVTAIFPGDDIPYSSKIEDFETVNEDW
Ga0208179_10178589	F073421	GGAGG	MGYRSNVVLAISKHLTPFLTLATAQNAEAQALVFKHADQFDRDYGGDKSWLFVWDSIKWYESYEDIQALEKFIQEATSDEYSFEVDGQTQNSCEHIRFVRVGEDHNDVEMSGEGFWDIYPTTHINY