Scaffold Ga0208179_1001893

Overview

Basic Information

• Taxon OID: 3300025267
• Scaffold ID: Ga0208179_1001893
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10228
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019664	Metagenome / Metatranscriptome	228	Y
F021121	Metagenome	220	Y
F025767	Metagenome / Metatranscriptome	200	Y
F076174	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_100189311	F021121	AGGA	MADFEPYSDEVCAQAIKSFQERLVEADNLKKDDNGMINYETCWKAMRKEGPMILNVVKHLLSMHINRHHRKEA
Ga0208179_100189316	F025767	GGAG	MELLVGRTMAVGRFNRGKMEYRMINPATGEPEDVTATVADMLTLKAEGWVMVFTPNKNSIISGRDISGNAGGHGSDEGWKDNLRRIRDLNPGSTIDV
Ga0208179_100189321	F019664	N/A	VKETDDGKTIDGQDAGAVPAASTNSRVMYQGIFDFARVLNAYYYTPDEWSRQGMWGPLPDDRNSLMGANQDRLTDENLQEDSDTPQEPMMTSISRNMP
Ga0208179_10018938	F076174	GGAG	MTVIMPSIEKLLIMTPDQKAVISEHTAEELEECRLAIQGTSNIIQYVFKKIEEDE