Scaffold Ga0208032_1080559

Overview

Basic Information

• Taxon OID: 3300025266
• Scaffold ID: Ga0208032_1080559
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 669
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022285	Metagenome	215	Y
F034719	Metagenome	174	Y
F101914	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208032_10805592	F034719	AGGA	LHRVSDKVWDYDAIDALRNEEWGGIHKLVTDHAVEKRVTAEEIAKRNSIFYNHKEINR
Ga0208032_10805593	F101914	AGGAG	MTIHWTCSNCGCVHWDGLKPISCIMCDNGEFLDGPEKYYKKSFSKQTNYVKEKKDDKD
Ga0208032_10805594	F022285	AGGAG	MIKIKKPQTIVKWGNEDVTMLELFKELDKLVCDPVRNMQEMDGDMYMSDYQKLSQAFWRISN