Scaffold Ga0208032_1045757

Overview

Basic Information

• Taxon OID: 3300025266
• Scaffold ID: Ga0208032_1045757
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1058
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014793	Metagenome / Metatranscriptome	260	Y
F082788	Metagenome	113	N
F092715	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208032_10457572	F014793	N/A	MFEEQVFWKEGFNGEANGGLHFRSFDLNKFIKKVEKDGTEVVGIKFEENNLELIIKNKE
Ga0208032_10457574	F082788	N/A	MINRDKDMLNYVIKELSNQILYDGHKGSYSNDVAEKIIADYVIETNLVSKEFFHDHWAENKTKTLLNLLNDLYKRYESR
Ga0208032_10457575	F092715	N/A	MKADKDFDKILKVFLKVGWKNITQQQILSLAYKELDKLLPIDDYWESDEHYDVSNLIYDWCLGNSIITQAWLDDTLKHLDDERLMELLPILFKNYKRYDHNTK