Scaffold Ga0208032_1038157

Overview

Basic Information

• Taxon OID: 3300025266
• Scaffold ID: Ga0208032_1038157
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1216
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010503	Metagenome	303	Y
F086186	Metagenome	111	N
F087770	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208032_10381572	F010503	AGGAG	MGTKMDHDRLYKIQTYSFHDAIITVTESCYGRTEIDKPAKPNKHGYTQSPTVHTDGTEHYYKYDNWEEAIAVVPLHFDYADKLTEADKVKTVLETVDALKKAYDSYPDGEINISWTMRRNCVNQD
Ga0208032_10381573	F086186	GGAG	MNMPSNQYNLEHLTPLSEERQRLMDAVEESQWEGDMNRADLLSTELYLVNQCITKGELYAPLF
Ga0208032_10381574	F087770	AGGA	MALKEELKSTHTIRKACDFYMRTPKFCALGGKSQYDYERNLTFACVTPVQGGKLLGNIKLKDIQFSNVTIAYDYWQVKHGVRAANYIATCLSIVLNTARR