Scaffold Ga0208032_1018997

Overview

Basic Information

• Taxon OID: 3300025266
• Scaffold ID: Ga0208032_1018997
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2018
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008384	Metagenome	334	Y
F013231	Metagenome / Metatranscriptome	273	Y
F024348	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208032_10189972	F013231	GAG	MDIKKLNMEKTYQTCKLIKTKIDNHLQEMATLFANLGTDSTLEEIKEAYIQESNLIDIIEELDPVKGRSLRASY
Ga0208032_10189973	F024348	N/A	MKFDQAYEDITDTEANLIINIYETIDALVHHSQPVTLVRLSYELGITSAELSDYLPTIITILNKVEEQYEVR
Ga0208032_10189974	F008384	N/A	MRYDKEKIEEEAITSVRKGRITEPLGTFILQRSLEIAGSAFVTNGDKELEQALIDAAVMRTCEKFLDYYEEGKSAANLIISIIYSTMTNRIVSLKWKDVYGTNIKGNILVIENGERVTKLIRYTKDDYLSEKL