Scaffold Ga0208032_1006557

Overview

Basic Information

• Taxon OID: 3300025266
• Scaffold ID: Ga0208032_1006557
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4012
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004988	Metagenome / Metatranscriptome	416	Y
F092702	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208032_10065572	F092702	N/A	MGKLNHTIDTMWHEIEQVKDTNIKLWQFIEEHENDFK
Ga0208032_10065574	F004988	N/A	MENVPKLVETICPRCDGNGFIKIAPVIATVGDGGKEIDCPQCEVEFLHMGKKVTTHSGYVFLPIEDTRKNVEGGRESKIKWSGETLPEVGKE