Scaffold Ga0208032_1004643

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208032_1004643

Scaffold Ga0208032_1004643

Overview

Basic Information
Taxon OID	3300025266 Open in IMG/M
Scaffold ID	Ga0208032_1004643 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4988
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	West Anvers Island
Coordinates	Lat. (^o)	-64.45	Long. (^o)	-64.88	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000908	Metagenome / Metatranscriptome	841	Y
F006765	Metagenome / Metatranscriptome	365	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208032_10046436	F006765	GGAGG	MKAQVKFEWRQLHEPESYQSPAYVIGNALKEAGYSVANFPDVQGAWDEDKPAHLGGPWDETRLPHEEVAGE
Ga0208032_10046437	F000908	AGGAG	MDQEQLKRIANAMEEILRMVKADQERSRKYMEDKDESTS

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