Basic Information | |
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Taxon OID | 3300025266 Open in IMG/M |
Scaffold ID | Ga0208032_1001942 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8473 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (64.71%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | West Anvers Island | |||||||
Coordinates | Lat. (o) | -64.45 | Long. (o) | -64.88 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F010277 | Metagenome | 306 | Y |
F038850 | Metagenome | 165 | N |
F041865 | Metagenome | 159 | N |
F045138 | Metagenome | 153 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208032_100194213 | F045138 | N/A | MTFNTLNTDRNIFDNQNFAFGVEPEFNTVGFGAMNRHNNSLGLDKIVGLQYVYDGSRVDGEGRLPILSNSQKSYNYLKAVLEQLTAKAATVNWTCSVHIHLSRRPITIDPNEFHDKSIAHTERTNQALPSRNNVDYFGEAIPLEILKDVGYRVSKNISQYNSFLAPSRIDDGGYANNAMRSAGQKNGYFCKKPLDHNMIKNTECTWHKLKRVISPNGKFSAINANHWDDYETVEFRSHGGTLEIDKIWPYMMFLSNMQKHSIINRHSQIQAVQNTPPYIGRSEYTRQSLAYQVMRRVGGATTQEIMDASGIQTAQRVRSMISEQIRPRLEREFGRDILITHNQQHYNHRYSASQGRYDLNGYEIPLQVNNGSDGVAFSSNGGTDLLLGLDSYYKSNLKPFRI |
Ga0208032_100194216 | F041865 | GGAG | MKRNEESYAKVDKKEMFNYRGTLGLSQVVMAKKLGLSHRMWNHYEHGTKQVPISVVLSAKYLCKNLDKMDKLHDDIKQHEEPLTKWDVDRIEALMRAAKTKGHNSNDNDPTIARIFTQCEKEMGFLLSKIN |
Ga0208032_10019422 | F010277 | GGAG | MSRLSDKLLEVELFVGEQLADYTNEQVLKKVKIKFGIDMYVDHAKDLLHEFQQEVNLERLQS |
Ga0208032_10019426 | F038850 | GGAG | MRKLPKEKFVIHCKETKYYVVDIEADNYDEAVKKWQIIAKRRDYTTIHKEMKTISVSQEV |
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