NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208032_1001942

Scaffold Ga0208032_1001942


Overview

Basic Information
Taxon OID3300025266 Open in IMG/M
Scaffold IDGa0208032_1001942 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8473
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest Anvers Island
CoordinatesLat. (o)-64.45Long. (o)-64.88Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010277Metagenome306Y
F038850Metagenome165N
F041865Metagenome159N
F045138Metagenome153N

Sequences

Protein IDFamilyRBSSequence
Ga0208032_100194213F045138N/AMTFNTLNTDRNIFDNQNFAFGVEPEFNTVGFGAMNRHNNSLGLDKIVGLQYVYDGSRVDGEGRLPILSNSQKSYNYLKAVLEQLTAKAATVNWTCSVHIHLSRRPITIDPNEFHDKSIAHTERTNQALPSRNNVDYFGEAIPLEILKDVGYRVSKNISQYNSFLAPSRIDDGGYANNAMRSAGQKNGYFCKKPLDHNMIKNTECTWHKLKRVISPNGKFSAINANHWDDYETVEFRSHGGTLEIDKIWPYMMFLSNMQKHSIINRHSQIQAVQNTPPYIGRSEYTRQSLAYQVMRRVGGATTQEIMDASGIQTAQRVRSMISEQIRPRLEREFGRDILITHNQQHYNHRYSASQGRYDLNGYEIPLQVNNGSDGVAFSSNGGTDLLLGLDSYYKSNLKPFRI
Ga0208032_100194216F041865GGAGMKRNEESYAKVDKKEMFNYRGTLGLSQVVMAKKLGLSHRMWNHYEHGTKQVPISVVLSAKYLCKNLDKMDKLHDDIKQHEEPLTKWDVDRIEALMRAAKTKGHNSNDNDPTIARIFTQCEKEMGFLLSKIN
Ga0208032_10019422F010277GGAGMSRLSDKLLEVELFVGEQLADYTNEQVLKKVKIKFGIDMYVDHAKDLLHEFQQEVNLERLQS
Ga0208032_10019426F038850GGAGMRKLPKEKFVIHCKETKYYVVDIEADNYDEAVKKWQIIAKRRDYTTIHKEMKTISVSQEV

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