Scaffold Ga0208032_1001183

Overview

Basic Information

• Taxon OID: 3300025266
• Scaffold ID: Ga0208032_1001183
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11612
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004461	Metagenome / Metatranscriptome	437	Y
F005132	Metagenome / Metatranscriptome	411	Y
F016593	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208032_100118313	F016593	N/A	MKRLKTGVVNTLSFVKLNSFTVNSFDVTLKKVVGVGSLTITNLTDINNLAACKDFIVINIDLILNNIEGGEYILSITNAGESYSYLTEVQDYTVTQDGTGVYSDSVRFTDL
Ga0208032_100118315	F005132	AGAAG	MVDIIFIDDNYLYQNFPLPKRMERSSLLALIQLEQFTSIQDLMGTCLYDHIEAKVVAQTLTTDEQALFKLVKYSLAMYSAKAAVSILRTATAITKAEEQKQDQYILDTISTTINSKIDYINKRVTNYILKNATLKAIAIADGCDNDLFNSDDTYQGSVFYPEDGVTVKYCADGSVSYNV
Ga0208032_10011833	F004461	N/A	MSVTIASLPYGDRRPDLFIDSMVKSAAVLNRFRLVDGVKAKVNVPIFDASLTFGTDICVFTPASSASIAEKEMTVLTYKWAFLNCKNALESSYRGLLLKKGQNNPETMDAEFKDWVFDYFAKLSAEKALQLAGTELTVEMLADATVNDFDTNAALTPLNILDKMQGAYEAMSDVMLAAVYGDADRDFKPVIFLGTAAMQDYQIAIAGLYTTTPQGIVEGSIPAYYGMEVAHFPSMPANEFMIAAPQNLVMLTDEYNDVRAIDMKYDSELASDKIWGQFKLGFSYLKGDEIVYAKNFA