Scaffold Ga0208032_1001035

Overview

Basic Information

• Taxon OID: 3300025266
• Scaffold ID: Ga0208032_1001035
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12615
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022087	Metagenome	216	N
F023713	Metagenome / Metatranscriptome	209	Y
F050686	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208032_100103511	F023713	AGGA	MVKETLILLATQIEERRKELLESMGRGTDKFEAYLAAVGEIKGYMIIQAMIADAVKTHEEGDEDFGANPTDSVVKK
Ga0208032_100103516	F022087	AGG	VSKLKIPQLSPAEESDLVDEPMSVMPEIESNISVPRTKKEAIPDMTSEQELRVRTHTIKELSDIKGEDISPSAEHQEQAQELAREMMTNKKLKPEFADYPNETMAFLAGLVAQTNCMIVEELSDLKLYAVNSFVQISATAEKDRDKLAALRAIGEVDGVDAFKKKTEITHITKSGDELEKELRETIEQLKGTVIEGEVIESKIND
Ga0208032_100103518	F050686	AGGAG	MMDKATVLDTPEQIDRYRMAVVRQGIKALLIGMKINSGYTSTACRTFVTKLTGTKYPAGKNGLSLALLDLNEILGEV