NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208032_1000610

Scaffold Ga0208032_1000610


Overview

Basic Information
Taxon OID3300025266 Open in IMG/M
Scaffold IDGa0208032_1000610 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18303
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (7.41%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest Anvers Island
CoordinatesLat. (o)-64.45Long. (o)-64.88Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027845Metagenome / Metatranscriptome193Y
F039623Metagenome / Metatranscriptome163N
F039638Metagenome / Metatranscriptome163Y
F103244Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0208032_100061015F039623N/AMELLDSNNIISFRKFKCLITNQIYEIVQTECTGRYLINATDTLVRSDGLRKSFARMELRTRFSNIEGIPEIDYLNKKKKKR
Ga0208032_100061017F027845N/AMTQTEIIAAVKGIHAEVDHEGVDIVYNDNNYDYDIRFTSWDCLFTIEVYSKDSEVPLAILPKTMTEIFDYTVDLHSEYMRDIDSMIDTRDYLDVYSN
Ga0208032_100061018F103244N/AMRVEDLTSYENDKSKVTVYMESDTDGSYHFLKHIEEKGSDNEQLIRYSLEMFLSEYYMIEKFIKGNLVADRKFYKQVVNLKANRNG
Ga0208032_10006109F039638N/AMIIKHTLELLASEDWLVSDKDIQIAKGLYELPTTFAELKMNNKRKKLLK

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