Scaffold Ga0208032_1000610

Overview

Basic Information

• Taxon OID: 3300025266
• Scaffold ID: Ga0208032_1000610
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18303
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (7.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027845	Metagenome / Metatranscriptome	193	Y
F039623	Metagenome / Metatranscriptome	163	N
F039638	Metagenome / Metatranscriptome	163	Y
F103244	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208032_100061015	F039623	N/A	MELLDSNNIISFRKFKCLITNQIYEIVQTECTGRYLINATDTLVRSDGLRKSFARMELRTRFSNIEGIPEIDYLNKKKKKR
Ga0208032_100061017	F027845	N/A	MTQTEIIAAVKGIHAEVDHEGVDIVYNDNNYDYDIRFTSWDCLFTIEVYSKDSEVPLAILPKTMTEIFDYTVDLHSEYMRDIDSMIDTRDYLDVYSN
Ga0208032_100061018	F103244	N/A	MRVEDLTSYENDKSKVTVYMESDTDGSYHFLKHIEEKGSDNEQLIRYSLEMFLSEYYMIEKFIKGNLVADRKFYKQVVNLKANRNG
Ga0208032_10006109	F039638	N/A	MIIKHTLELLASEDWLVSDKDIQIAKGLYELPTTFAELKMNNKRKKLLK