Basic Information | |
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Taxon OID | 3300025266 Open in IMG/M |
Scaffold ID | Ga0208032_1000610 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18303 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (7.41%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | West Anvers Island | |||||||
Coordinates | Lat. (o) | -64.45 | Long. (o) | -64.88 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F027845 | Metagenome / Metatranscriptome | 193 | Y |
F039623 | Metagenome / Metatranscriptome | 163 | N |
F039638 | Metagenome / Metatranscriptome | 163 | Y |
F103244 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208032_100061015 | F039623 | N/A | MELLDSNNIISFRKFKCLITNQIYEIVQTECTGRYLINATDTLVRSDGLRKSFARMELRTRFSNIEGIPEIDYLNKKKKKR |
Ga0208032_100061017 | F027845 | N/A | MTQTEIIAAVKGIHAEVDHEGVDIVYNDNNYDYDIRFTSWDCLFTIEVYSKDSEVPLAILPKTMTEIFDYTVDLHSEYMRDIDSMIDTRDYLDVYSN |
Ga0208032_100061018 | F103244 | N/A | MRVEDLTSYENDKSKVTVYMESDTDGSYHFLKHIEEKGSDNEQLIRYSLEMFLSEYYMIEKFIKGNLVADRKFYKQVVNLKANRNG |
Ga0208032_10006109 | F039638 | N/A | MIIKHTLELLASEDWLVSDKDIQIAKGLYELPTTFAELKMNNKRKKLLK |
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