Scaffold Ga0208032_1000419

Overview

Basic Information

• Taxon OID: 3300025266
• Scaffold ID: Ga0208032_1000419
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24721
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (77.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044153	Metagenome	155	N
F045378	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208032_100041914	F044153	AGGAG	MSIIIVEVPHQRSPSVWFAKNEQHIIQMASEVHDFGYENWNMERAVICFGDEIPDNLTALLSKHGKAICTGYCQESEFYAPKDAPTEIEAAKEAIGHDLNTCYFLTVTEAKEFKGHADVEIALNKFIKDNEWLFGGDA
Ga0208032_100041922	F045378	GAG	MNQMLGNYCPIADAVSAHTMIFDAPEVTPDESTSEIVAELLEHGCVTINRTEYHVMELYQWGGEKTEEDLRNLVFMNIRDPEAAKELATEIITECAIYFFGVHDPGLASIYYQENHGEY