Scaffold Ga0208029_1016586

Overview

Basic Information

• Taxon OID: 3300025264
• Scaffold ID: Ga0208029_1016586
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1909
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040140	Metagenome	162	N
F054107	Metagenome / Metatranscriptome	140	N
F081448	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_10165861	F054107	N/A	YLIRNAKFTEMDKMVKEKRKIHSEKVEPKVNAAAGNFVQAVQTGLTEMNKRLQDMEQKVQEKDKLLNDMAMALKSQQDVLVNTPPQEVPGSEAERNQPMTKGDFFQVIKDGIQLLRQQTAAPDPRIERAIDMQDKLVDAMWEKMARALISDKDAAPGVN
Ga0208029_10165863	F081448	N/A	MKALDVLTDIIKHKNLAKEYALQESKDLRVLSPKKDTALACLLSGIERVETIPEWVKTSWFNWIFYAMRMISDKEVDALAESMSKGLEEYKMAYFSQEFIESLPKEKRPAAEALLKPHLLKLKGSHTTMNETLKEWRI
Ga0208029_10165864	F040140	GGAG	MLSCKLSMPKFGKKFEDTGYDGSHHWKVLHDEVNKIECDYCKEKGVKLMRGLHDSVNLHLGKKALHPKDLDFALKHIVWSKKQLEPGLKCELC