Scaffold Ga0208029_1004324

Overview

Basic Information

• Taxon OID: 3300025264
• Scaffold ID: Ga0208029_1004324
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4740
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020469	Metagenome	224	Y
F051571	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_10043241	F020469	AGGA	MEITTVTLMLYFAAWTIFYALLSKYIAKLSKDEWVSWAKSRESDDELIEILEGVIDEIEDRIHTKLEQFQSSFFGSIGAASKKIDDATGQTTIKAITRENPIMG
Ga0208029_100432410	F020469	AGGA	MEITTVSLMLYFAAWTIFYALLSKYIARLSKDEWVFWAKSRESDEELIEILEGVIDEIEDRIHTKLEQFQSSFFGSIGAASKKIDDATGQTTIKAITRENPIMGFVADMLMKRSGAEGLLNAVKGAEQGSDKPKTQQKLGLGGP
Ga0208029_10043248	F051571	GAG	MVARRRKRMRRRAPRQFGINVIETGAALALLEQTSAGSAMKSFIAGDLNTGLTTLSKAAKSNKQAISKTLIGAFLAKAAVKSFSRGSPVLASLGPIKVRA