Scaffold Ga0208029

Basic Information
Taxon OID	3300025264 Open in IMG/M
Scaffold ID	Ga0208029_1004302 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025264 Open in IMG/M

Scaffold ID

Ga0208029_1004302 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4757
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4757

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	6.37	Alt. (m)	Depth (m)	2851
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

39.48

Long. (^o)

6.37

Alt. (m)

Depth (m)

2851

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F025299	Metagenome / Metatranscriptome	202	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_100430210	F002100	AGGAG	LSQIPRDSFRPALIKPTFNVSDYGHDVIIPLNCLTGSATTTLTPSTATFVQVLEDSRVPVDEVNQFITDSDKMELIHAGNDTDFDTSWEWLPDMSFQAYKASFSVAVAMKVSAYTSGNFAISSVQLTMKVIGGGEGDEVIIDKIINPGMSNMTSATEQVAILNIDTKTSAKIPDKPVSIQVKVNTSSGTGTYQCGIVPLFCYFGSAVPKTWTTSSVVVHAHADLAHAFPIFRDEDNMNMLDRSGIGL
Ga0208029_100430211	F025299	GGA	MIVEEIPFFVEFVIIGIVLGFGYGFTKLFLNHAKDKSKVRRSERKAKEANSMEDEMDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLAKKAQQYEMPIRM
Ga0208029_10043028	F003270	N/A	MARKRRRRSSKKKNGSKSIKSMVRQVVNKGSAPLAFWQQLSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPSGQPRINPAGIINKWVGIGLAGKLYGKLGKSMKLPEASMIDRVGSKLIFGGAVGGFFDPPGNPGGYVSTANVTPNVIAQNRATTQRSFAQFQRNRSFVPLDSFDSSTGSAFR
Ga0208029_10043029	F008596	GGAG	MSGSWDIATATSLLTGVAKTQINGGANLTKPTQAVNLVEVVPYTVSSGAYTAGESIALTAYLDSFSVDLLPKRIIVPPVQAGLGTFINIVAPILEAYECNTALQQGATSQFIVSGQAQVANTVAPLMAMALHYSTTPPNRPEHFYHKPDNESTFTTATTNSGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGEFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQLASYHNTHMPMKTSCKISTSFTNDITQSATTRFIMGVGYTKQG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208029_1004302

Overview

Ecosystem & Geography

Associated Families

Sequences