Scaffold Ga0207895_1015927

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207895_1015927

Scaffold Ga0207895_1015927

Overview

Basic Information
Taxon OID	3300025260 Open in IMG/M
Scaffold ID	Ga0207895_1015927 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP112 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1336
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	15.9164	Long. (^o)	-124.5211	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034709	Metagenome / Metatranscriptome	174	Y
F045139	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207895_10159275	F034709	N/A	MQNQSQTDKIKKRIKKISIVMQKVEHVAKEEINSSEEYLQVCGALLAVTRNMYVDALGPYDTARMFEAVAHSFHIQEELIEVFQRDSKTPTMH
Ga0207895_10159276	F045139	N/A	DLERDKLEAETSIDLMKASADVNKEDSTEAMALLKENMAATREAMKNQSAEKVSRENAKSKSNGQNKKTN

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