Scaffold Ga0209148_1000059

Overview

Basic Information

• Taxon OID: 3300025254
• Scaffold ID: Ga0209148_1000059
• Source Dataset Name: Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 350224
• Total Scaffold Genes: 354
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 306 (86.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.6667
  • Long. (^o): -78.5097

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059118	Metagenome	134	N
F080973	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209148_1000059268	F080973	GGAGG	MALPTQGDVRELIARAICQLTGIPTCEIDLGPSRVLIHPDTRCGYNWSYPDAMVKARFRPFVHRAVSMVRDQYPILR
Ga0209148_1000059288	F059118	AGGAG	MLLIALMGGLLANPPVHDPLVPPMRVTTSFACHGTQRSITVARGIGRDAVVAVTANGRPMVGAAMSAIRIGLAPLIAIEEVTPYCGDGPDRIRIKGWIDDRKRNLMIFFGTGGQAAVRDV