Scaffold Ga0208182_1036640

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1036640
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1087
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014329	Metagenome / Metatranscriptome	264	Y
F065113	Metagenome	128	Y
F081214	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10366401	F081214	N/A	MSKRNYEIRRKAGDKMWTCEVTNSYGETHTNYFETERKCREHIYYTWENEVDPLAKARAEHWRDDLLYNAIEECVKMDKERGVEPSLD
Ga0208182_10366403	F014329	N/A	MRNYSVTKKSGQLHNCEVVDSYGNKYQNYFEHAHEANDWIYYIWENEKPPLTEEEEMDLLANAIWGCTKLDEELGLLKGNKDNLD
Ga0208182_10366404	F065113	N/A	MYEVLEHWNEYQKEKELSDNSTKLVSEYDKESFDEWMNDLITKNGTTEL