Scaffold Ga0208182_1019288

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1019288
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1710
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021104	Metagenome	220	N
F028194	Metagenome	192	Y
F040136	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10192882	F040136	N/A	VKYTEANSAPGPGTRDGTSVTERDTSMAERGRRRKWTNHELNHVKYLTKCNSASEIGEILGMTKNAVIGALYRDKIRNGYVPPEDSKYTGPKNL
Ga0208182_10192884	F028194	AGGAGG	MIPTKEEIESRKKELQKQLDDLTAKISQGRDAIRNMEATINGLQGAIQQCNWTLELYKEVKNK
Ga0208182_10192886	F021104	N/A	PYHHNDQWKNMQKNYPKDWEDACEVDDKIRHGLKNTTAELFLHKKAVPLRSMNFLEPPKQKELFETFDEEFSDECEGLCGV