Scaffold Ga0208182_1016332

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1016332
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1921
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053776	Metagenome	140	N
F071943	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10163321	F053776	AGG	MNWSTKLRPQILAAMFLIAGLGALGCYVGLKMDASEIVTGALGATVSLIGVLGMKVLESD
Ga0208182_10163322	F071943	GGA	MNKLTVIRLALRHTDSCVMAVELIEEVQRVKREDGTIARSDRGQLMSRFWKLVKTI