Scaffold Ga0208182_1014577

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1014577
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2079
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F004988	Metagenome / Metatranscriptome	416	Y
F030928	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10145772	F000720	GAGG	MTLIKENKTVRKEIPNRMMSATFALPIDGRRVVGIVNYTATETGLTPMAFWIKLKPTDSYLDRELRASGKLISRCMQHGESLKELVDTLSQDNVVGQMANYLYKNMEDIIMGKQPEKRQRELSTDPYAMKE
Ga0208182_10145773	F030928	GGAG	MREWLKTLEAYISFCILGFTIFICVIVIIVNCRYIIKLENTIETMWHEIVQVKETNIGLYQFIEEHKNDFD
Ga0208182_10145775	F004988	N/A	MVKLVETICPRCNGNGYIVVQNEDIDCPMCEEDFMHMGGKVTTHNGYVMLPIEQTRKNVEGGRESIARWSGETLPEKGE