Scaffold Ga0208182_1009356

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1009356
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2835
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025764	Metagenome	200	Y
F038273	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10093561	F025764	GAG	MEKITSVKDLISVDYKDSNRSSASVCYGGLAGMLVATVKWAGISIRKDQTAYALEILERATAEREKVNNVVERYNRRFNH
Ga0208182_10093563	F038273	N/A	MIYTNLLKLKDELKNKPEEKPRLDRVMSILMRRYDYGIDDMEEYRFGDFRDEIVAVNLRR