Scaffold Ga0208182_1004703

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1004703
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4624
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003761	Metagenome / Metatranscriptome	470	Y
F037678	Metagenome	167	Y
F054779	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10047032	F003761	AGGA	VASLIELATTEIWGHEPCWYLSEINQPAPDSRTVRRIQAVTVIRNDRRVKLKQDLGDARLFGDEFQLICGVPDGKGGGEALYTVEEALEMARQMNIAPPPRPELKPRDWNKIFWDNVEEKEKWKRGASVFGPEYKKQRNT
Ga0208182_10047034	F054779	AGGTGG	MPSFSFSPLAGTLVTQAVTDTAGGIGSGNIPSGARYAEGYVRTASIVETRDGTAPTATAGTEWDDGDIVLLRSRYEIVNFSAIEKTSTDAAIDWQFYNRAPN
Ga0208182_10047036	F037678	GGAG	MATNQATIAHLETIRTAVNTAINNVNRYGSMNGEMTNDAKAALLATVTTVPSALQHASNCSTCNGWDGSVESEE