Scaffold Ga0208182_1004438

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1004438
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4797
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001594	Metagenome / Metatranscriptome	666	Y
F007267	Metagenome / Metatranscriptome	354	Y
F007647	Metagenome / Metatranscriptome	347	Y
F009404	Metagenome / Metatranscriptome	318	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10044381	F009404	N/A	RNTMSNNNEPEEIQPKGESLVKYCAICGVELEETVLTNRYWKCLSCESIFQVKVRAEN
Ga0208182_10044383	F001594	GAG	VEKTKLTKDEYLDSLDPDNLNLSKKDLLDFCHKCIEEWKKNKLGNFKFIVSMELILAGVKITPEDVLKAVWKKILVWFWDLQYKNALAEKEGMLRRLSGIGTS
Ga0208182_10044384	F007647	AGGAGG	LEQVRINHVVNEFFNSLKMDEDKMLDTGLTNNATVEVLRLAVLTLIQDHPKRFEQYVKFFEFGCMYLQDESDEIPEVEKIGR
Ga0208182_10044386	F007267	AGGAG	MRLKIFTCPECKFRKFESINALNVHIGKSHIVDYKISIINNKPAFKKKTRGKAVQYNKA