Scaffold Ga0208182_1003889

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1003889
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5278
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003515	Metagenome / Metatranscriptome	482	Y
F003706	Metagenome	473	N
F040923	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10038891	F003706	GAGG	MSEVSDLEIGKLIQKVDSLETMVREQNDRLDRLDQQLERTRGIGIGVVLATVGLGGLGGSLFTRWLSG
Ga0208182_10038892	F003515	GGA	MKKILLINFVACLFVGALWSIKSFAGPPEGMERQMIQFPAVCLPATVEKNHFAVLMGALISDYGVHISMTFSASQDQSRRVAIIENPATGLAGVLMITDEQTCIAFSGEDRASFIRPPNHPVGTENEDTQT
Ga0208182_10038894	F040923	AGGCGG	MRRLRRIGRRDYPPRRVAYRMVNGRKFYEVQPRAFPYGPLPYVQNYYWVAGYTTDD