Scaffold Ga0208182_1003199

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1003199
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6132
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001651	Metagenome / Metatranscriptome	657	Y
F004769	Metagenome / Metatranscriptome	424	Y
F005219	Metagenome / Metatranscriptome	408	Y
F079221	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100319912	F001651	N/A	MALQNGTKIGAELRRSQVLQLKQAGASEQAIAEQLGVSKTQINNDVKRRLAEIRKGDTEAVEQEYTLQKSRYERLLLRWWSQATGSDDTQAARATGIVLDILRRLDTIGGLVPDKPLMQFNQQNVMVGGVTFADLLREAMGGQVVEIEGIVCDDVDPS
Ga0208182_10031995	F005219	GGAGG	MTRTCPECDGAMTAALLRPDPHEPPVYMLICPCGHSEPAPADIEADQEDRPRMPGF
Ga0208182_10031997	F004769	GAGG	MSTYNKQATRVQVEVDGYTWRVHGRRHGLRWRVHLVELLGPLPLDYPVTPRFRDKIRTALAKALEMDESEVARIPADLILA
Ga0208182_10031999	F079221	GGAGG	MVWQNGGMSRNMWECAFCRKRSRVAKRIILTIDNGNHGRHLMKCCDLECLRRLLALWEELETKKAVDAWTGTSSGY