Scaffold Ga0208182_1002882

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1002882
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6586
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009562	Metagenome / Metatranscriptome	316	Y
F012507	Metagenome	280	Y
F037424	Metagenome	168	Y
F058454	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100288212	F058454	GGAGG	MQVGDLVTYAFQAARWRKGQSVDVGLVVETGKWTGNADVKVLWMGPGAASTEAITQKSDHLRLVDKSLTK
Ga0208182_10028822	F037424	AGGAG	MSWSGTVTCSHCYRQGHNKRKCERLTESILNDYKLWADGVKRHEDSPTQAQYHTERAEHYRTQYMKRTKIDPATGEKVKNKVAKAERMKNVTCGYCQDTGHTRRICEVVKRDKLVFIEESRRVRAGALENARETGIGVGSMLPIRTHGYHGPDQEWGTYTSLRYVKSVDWKAVTAAQAGLWVHHVEAGKLASANQSRWTSRDKILNLRENFNEARSYAESLKQPEPTASLIPSLDPPDGWLECEPSTIDIARRFPTTGGKYDKRRTHDYSWPSGETAQVIRDLGLEEHWKGRF
Ga0208182_10028825	F012507	N/A	MISSLYPMWTDKLKIGDLIYSRRDNKPALILDAEETARAKYGDIANKRWRFKLHIDGDQGWLDEVKLRALYKLP
Ga0208182_10028829	F009562	AGGAG	MLTAIPLIRTDDDSNLTPIERTAVGCEQVITALMMQATMTDPQVTDQEREVYTTLSVATIVPAEA