NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207904_1040762

Scaffold Ga0207904_1040762


Overview

Basic Information
Taxon OID3300025248 Open in IMG/M
Scaffold IDGa0207904_1040762 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-118 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)811
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)11.9811Long. (o)-108.0335Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000319Metagenome / Metatranscriptome1307Y
F003952Metagenome460Y
F055776Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0207904_10407621F055776N/AEYKIMQTDKKPSELSTQLFDMTKSFSNMSRIGNLYGRLLMIKDMQIFLGEQEVKVKKEIEENESNV
Ga0207904_10407622F000319AGGAMFKDLLLIILGAAFSCAYFYWQSYKDKKEIKKQERLNEIRTN
Ga0207904_10407624F003952AGGAGGMIYNLILYLGLFVIVGGFSLFLYSEMKLREIDIQLFKLEQKIKEEYKNGS

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