NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207880_1015425

Scaffold Ga0207880_1015425


Overview

Basic Information
Taxon OID3300025247 Open in IMG/M
Scaffold IDGa0207880_1015425 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-91 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1252
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-5.7497Long. (o)-170.7411Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002150Metagenome589Y
F025299Metagenome / Metatranscriptome202N

Sequences

Protein IDFamilyRBSSequence
Ga0207880_10154252F002150N/ALVSLTAAQIGVGVARRGKKEVGELYQRKLGYNFVDLITKLVLFYSIAFLIAKYMEAVIYFQGGLSTIAGFFGIKMAQADQLPRQWVELFVDTNQQTYSATPTGAGQFNPPGWDKPYDYGSVQHQEAEPYLFPQKEVKYKFWDLINAIVVFYIGWEAYKYYDNANKDPDKKVDFLTLAIFSLLMLAVGVLSFSKFLGRFSFNRFQEENK
Ga0207880_10154253F025299AGGMIVEEIPFFVEFVIIGIVLGFGYGFTKLFLNHAKDKNKIRRSERKAKEANGLEDELDSYINNAPQIAQKIQAELDYLKKNNATPEQMKSLESKLELLNKVQQYEPLIKMIGKPALKKIMSIIDRV
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