Scaffold Ga0207880_1004287

Overview

Basic Information

• Taxon OID: 3300025247
• Scaffold ID: Ga0207880_1004287
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-91 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2627
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured Mediterranean phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -5.7497
  • Long. (^o): -170.7411

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025052	Metagenome	203	Y
F099427	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207880_10042871	F099427	N/A	GENAECTQGVVWNYRWGVWYVWPTMPMSAATTVDTATDTQVIVTGEAQTGKGGFAYKFFSGDSFDGDTIPARWITKVLYGADGDTNLMAFIKRWRWLDIIAEADTDVTLTVEWMSGSASDDAVSRGAASRSLNPVGLQLITTADPDADPPTDSSGIATSQGSDIVVPYESVQKIINMEGTHGDYVQDVGCRIRISDDAADGSWSLEGMTLGYQVLPGATRRLQG
Ga0207880_10042873	F025052	GGAG	MARSNIPLDFPTPDFARVREESGPVTERAMRSLYFAALDTRRRLTRIQQELGWRDVAFAAGNFTANTGTWTVASADQQLYQFIKMGRFMVASFFLENTSTGSGMGNRLTITLPLGMAASNTTYTGPLTIRGDIETEGYITTGGTTSLYCFRTDHAAWPSSVTNDLDIRGMITLQVTQ