Scaffold Ga0207880_1004126

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207880_1004126

Scaffold Ga0207880_1004126

Overview

Basic Information
Taxon OID	3300025247 Open in IMG/M
Scaffold ID	Ga0207880_1004126 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-91 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2682
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-5.7497	Long. (^o)	-170.7411	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082535	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207880_10041263	F082535	GGTGG	VRFHANTTNVGTASVALSAATGAPDSNSRVLWIKVSARTGNGNVVYFGHSAVASTLGYELSANDSLEMSFRDQGGSVALSEFYALGGASSQNLDWAVILE

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