Scaffold Ga0207908_1017316

Overview

Basic Information

• Taxon OID: 3300025244
• Scaffold ID: Ga0207908_1017316
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-81 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 971
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -28.4105
  • Long. (^o): 179.1447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054918	Metagenome	139	Y
F057670	Metagenome	136	N
F090609	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207908_10173161	F054918	AGGGGG	MPIDWDQLKPQVENLALEHICRRCKRIIPGRDYRIAGEDGNYHIECYEEMQQEP
Ga0207908_10173162	F090609	GGGGG	MSTATSLLLYRRLLDGLLNRLDESEPPSSEYKEGSDRPQWLRVTDYAWLVQTLKELTEADPGFRQILAELKPRQCEGCTLTFTPHRPEQIYHDAYCRARANTRKTYYRQKGEKDAD
Ga0207908_10173163	F057670	AGGAGG	MTTENQPRVRYRININRLAKGQLSFDCTCEVDAPIEFIGPDQERLSRIALAEIREAVLEESDRLVAALQAKYPMGVE