Scaffold Ga0208830_1053060

Overview

Basic Information

• Taxon OID: 3300025238
• Scaffold ID: Ga0208830_1053060
• Source Dataset Name: Marine microbial communities from the Deep Atlantic Ocean - MP2634 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 628
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Northeast of Antigua and Barbuda, North Atlantic Ocean
• Coordinates
  • Lat. (^o): 20.0
  • Long. (^o): -52.63
  • Depth (m): 4002.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005464	Metagenome / Metatranscriptome	400	Y
F022429	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208830_10530603	F005464	GGA	VGLKDENMIRVGGWLLSLLCILIGSYFIWPHIHVALLGIVFLYLGVRVFNFSTFKEYAKKRQQLLLKLQKW
Ga0208830_10530604	F022429	N/A	MADLIGFSEIWNGPSFLNRKASACRMAERDAEGKKKRDKSGKLKAREHFAKDWDKDLWD