Scaffold Ga0208031

Basic Information
Taxon OID	3300025237 Open in IMG/M
Scaffold ID	Ga0208031_1000078 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025237 Open in IMG/M

Scaffold ID

Ga0208031_1000078 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37242
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (90.20%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

37242

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (90.20%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Orkney Island (southeast)
Coordinates	Lat. (^o)	-61.27	Long. (^o)	-43.92	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Orkney Island (southeast)

Coordinates

Lat. (^o)

-61.27

Long. (^o)

-43.92

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016211	Metagenome	249	Y
F028321	Metagenome / Metatranscriptome	192	Y
F038863	Metagenome / Metatranscriptome	165	Y
F039830	Metagenome / Metatranscriptome	163	Y
F062184	Metagenome / Metatranscriptome	131	Y
F066157	Metagenome / Metatranscriptome	127	N
F081777	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208031_100007817	F038863	N/A	MYRLYDYKCTLGHTNEHMVKGSPDFMKCKSCDAIATRQLCSPRSYLEPFSGDFAGATLKWAKKHESGRVHAEKVNS
Ga0208031_100007827	F066157	N/A	MWAIVLATMLASGQPQVPLMVSSYSTFDDCRLELLRVGAIGGYELVVSPMVGYSVVKVEANKTTTAFCVKNMQSI
Ga0208031_100007828	F039830	GAG	MNSSPLEIYPVHVSPSLAPLGQGLLIEPSVNRVNAEYLVVQPSREPYGVPQEYTKRVWIC
Ga0208031_100007829	F028321	GAGG	MLAEIAIANAIWKTLSTALKNGKQLYEVGGQVNDYLSATQKVKDKAGDANSRGTALEAYQFAEQQRVQRSQLEFHLKKSRLNGWSDFVKFEAEWHRKRKEEEQSKINARIRRNNKLQNDVALAINIGICMIIALGLLFGIAVYMKGYY
Ga0208031_100007830	F016211	AGGA	VSDLTKAEKNEIAELAADKAYERFYLAVGKSVTKKIMWIASAVLFTCWIYFKEGTF
Ga0208031_100007846	F062184	GGAG	MSSTFEEIRERILKKYDVDFLCELLGITSESLVDRYEDLIMKNLEMFEEAEADE
Ga0208031_10000786	F081777	AGGAG	MKDYKHKRLEASLEVRKQERLDRYLSLGLSALGALIGVFCIIFATHVALG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208031_1000078

Overview

Ecosystem & Geography

Associated Families

Sequences