Scaffold Ga0207884_1008496

Overview

Basic Information

• Taxon OID: 3300025236
• Scaffold ID: Ga0207884_1008496
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-144 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2082
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 29.1475
  • Long. (^o): -23.6838

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007035	Metagenome	359	Y
F050480	Metagenome	145	Y
F092708	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207884_10084961	F092708	N/A	MGCMINYNLVLYIGIAFYALIFFTFIAYQMHDRKKDREQWRLTQSYNKAKNDNR
Ga0207884_10084963	F007035	GGA	MYYILENCNGHFYTEAMANGEFPSLQAAEKKLQALEELKPEGKYFIVCNVGA
Ga0207884_10084964	F050480	AGGA	MDKEINGHLYIANDNLKRIADILEEILRLIKKDMGEMKKAAK