Scaffold Ga0207884_1007116

Overview

Basic Information

• Taxon OID: 3300025236
• Scaffold ID: Ga0207884_1007116
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-144 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2337
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 29.1475
  • Long. (^o): -23.6838

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000423	Metagenome / Metatranscriptome	1156	Y
F007005	Metagenome	360	Y
F011673	Metagenome	288	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207884_10071162	F007005	AGGA	VYYYPMFNKKGESQMEKIILVVEIIKLSDRHIYNIKKSANSLDKASEYLVALNNLNDDSNITYELFDRLGQFDVEKIEKVANDNR
Ga0207884_10071163	F000423	AGAAGG	MTIDKAIFYIKYYATKHGCVIERKATLDEECFEGVHKKFGYPYKIYVDVQATEERNNGKPQYRTASKKWEINNEQTI
Ga0207884_10071164	F011673	GGA	MNKPFKVLPIYLQPRILSAVSYIHLSPNKEIGLERINKVSRKLSERELKYVMSLLVLDKLLDMVEDSDEFKNFAPIKRTIH