Scaffold Ga0208571_1039170

Overview

Basic Information

• Taxon OID: 3300025232
• Scaffold ID: Ga0208571_1039170
• Source Dataset Name: Marine microbial communities from the Deep Atlantic Ocean - MP0103 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 615
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 21.51
  • Long. (^o): -23.45
  • Depth (m): 4005.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001594	Metagenome / Metatranscriptome	666	Y
F007647	Metagenome / Metatranscriptome	347	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208571_10391702	F007647	GAGG	LDQDKITKVVDAFFNSLKTEEDKILATGLTHNKTVEVLHQATMQLCQDHPERFESYVKFFEFGCMYLQDESDELPEVEKNGR
Ga0208571_10391703	F001594	N/A	KDEYLDSLDPDNLKLEKQDLINFCHGCITEWKANKIANFKYIIAMELMIGAVRVTPEDVLKKVWKKILVWFWDLQYQNALQEKNGMLKRLTEIGSG