Scaffold Ga0208336_1010196

Overview

Basic Information

• Taxon OID: 3300025221
• Scaffold ID: Ga0208336_1010196
• Source Dataset Name: Marine microbial communities from the Deep Atlantic Ocean - MP0372 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1889
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: East of Porto Seguro, South Atlantic Ocean
• Coordinates
  • Lat. (^o): -15.83
  • Long. (^o): -33.41
  • Depth (m): 4003.17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005610	Metagenome / Metatranscriptome	395	Y
F076495	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208336_10101961	F076495	N/A	EFIKFQKVTVKDKSGKSHTMQTRIRPGDTHVAIMHYDAQPATTVSSAVKAHTNLSFGSEKSLEKQISHAKKKFGLKKVEIQKIDKKYL
Ga0208336_10101962	F005610	N/A	MRSFKEYLTEADSEEVRDAKKVFTALQGMYPKIPKFPLVFKNLQTSKNLDKRGGGYLQTSKLKGGKFIFVDKMVIDDSGLGSFEPDYAVVHEFAHAILAVTKGYLGHNKKHADLTYKLAQKFGLA