NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208336_1001580

Scaffold Ga0208336_1001580


Overview

Basic Information
Taxon OID3300025221 Open in IMG/M
Scaffold IDGa0208336_1001580 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Atlantic Ocean - MP0372 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7251
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameEast of Porto Seguro, South Atlantic Ocean
CoordinatesLat. (o)-15.83Long. (o)-33.41Alt. (m)Depth (m)4003.17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002745Metagenome533Y

Sequences

Protein IDFamilyRBSSequence
Ga0208336_10015801F002745N/ATDNSSSLKIPISGPMFKRIWPDTIRATVFHTTDLAGLENLKKLEGGKKSISAFFSMMSRYMETGVATSGDVHVVVEMDADVLVSAKDDIWSQVDNKGRRWVELSWFEDPFRVDPKFSKVVKDLDTLIKGLVVKHLGPIMGQTETRAANPFELWSNMKRHLEAGRKGGGNRLRLVIKDYFDGVERILKKNSEVMGNIIYGYAKGKRMTDNSWDEQIVNNIKIKKVHIWPDSSKEMREEDEDEIKKQITDIKKWPIKAWDATIELEIYTRAVVAKEKGK

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