Scaffold Ga0207883_1034633

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207883_1034633

Scaffold Ga0207883_1034633

Overview

Basic Information
Taxon OID	3300025216 Open in IMG/M
Scaffold ID	Ga0207883_1034633 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-109 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	630
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.064	Long. (^o)	-133.3152	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053776	Metagenome	140	N
F071943	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207883_10346332	F071943	GGA	MNKLTVIRLALKHMDSCVMAVELIEEVQRVKREDGTIARSDRGQLMSRFWAMVKTI
Ga0207883_10346333	F053776	N/A	GAMGCVIGLKMQASEIVTGALGATVSLIGVLGMKVLESDE

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