Scaffold Ga0207883_1026927

Overview

Basic Information

• Taxon OID: 3300025216
• Scaffold ID: Ga0207883_1026927
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-109 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 743
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.064
  • Long. (^o): -133.3152

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002529	Metagenome / Metatranscriptome	551	Y
F033390	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207883_10269271	F033390	N/A	SAAGASIPQTISIDGMFNKWSGIGLGTLIYSMVPIKMLPHKGKAKTLGKSLLTGGILGGLFSVGNPHNTNLIAPSRAITVSSSEVSYT
Ga0207883_10269272	F002529	GAGG	MTYGYDDATFTAMSGVTEVQINSGTSLTAPDPAHGLLAVIPYLGELGAFTTNQSLFCAFRVQSDDVAVEPKKFVLPNVNTGDAAFTSVQAPALLAYPLDVPLNGGEHINYYGQPLVTNTVEPGIGATVIYSTTGTNGAESYYQRPTNETAAGTAINTRT