Scaffold Ga0209337_1212426

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1212426
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 775
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F029432	Metagenome	188	Y
F065113	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_12124261	F000126	N/A	MRDYSITRKEGEWYNAKVTDSYGNKYQNYFETASEANEWIYYVFLKEDWFNSVDSQELLYKAIENCKRLDKNINVREI
Ga0209337_12124262	F029432	N/A	MVQQKYNMMKYPRIIGWSVVITMWSCCGVGLSCLQEQGNDEVVNTAEDMIGWIGHDLQSGKVDSTIADTYIDNLEEIIKMEKTKWLNERL
Ga0209337_12124263	F065113	N/A	MYETLEHWKVYKQEKELTDNSTKLVSEYDKESFDKWMKELITRNGTTKI