Scaffold Ga0209337_1119950

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1119950
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1188
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F021674	Metagenome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_11199501	F006867	N/A	LYGKELVESIRKRCKIQPGMLVVSPAGGENEIPKVAVVMEVSPACEFDRDYEGAEGDIFYKCQPADGTPVFVDYAQNLREYS
Ga0209337_11199504	F021674	GAGG	MERETYNSRLKTNPEDIPLGSLLRVKKHCRENVTIRHNGEYGILAPSISGKYITHDVLFPNGTRCIFMPINWEVVSYAK
Ga0209337_11199505	F006383	GGAGG	MPNSTDKMWAVQQPGTLLRGRSSHQYGKLALVLEEAYAGPTPSNGYPPRKYVKMQWVATGERFEEMLNNAHNCFDIVSSCDTLGPE