Scaffold Ga0209337_1058033

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1058033
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1969
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006939	Metagenome / Metatranscriptome	361	N
F033796	Metagenome / Metatranscriptome	176	N
F059965	Metagenome / Metatranscriptome	133	N
F086976	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10580335	F086976	AGGAG	MSGDKIPDLDSSGKFVTPLSGNKVYKTRKEVVDAHLSEEINNTRFYELLGVYMEAEDDAPKYGFVGVGCISFAEAMLQDHQGAVVKPIRIPRLYTDEDFNKENEE
Ga0209337_10580337	F033796	AGGA	MSSKQDENKTYKVAGVHSGKKGVTVLDGHERVLGEAKESAKLLTGKYALENSLGITNFVAFNTHALTMLPPYSIDMEAEWNYVVEQEGDTPSVEINRQAEGSI
Ga0209337_10580338	F006939	AGAAGG	MTLPTNMVTNVLSENQNKFITVKFLTKDNEERTYTGRMNVIKGLKGNERGRIAAEALRKAGYITLKTKQGYKCFNVDRVLGFVAGGRRIFGLGNMV
Ga0209337_10580339	F059965	AGG	MPLPPSMEMELMNLGLIRSDLEELSSIARQTGFHETRAEIKAWHNTL