Scaffold Ga0209337_1055701

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1055701
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2026
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR1-KM17-C101 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036974	Metagenome	169	N
F037984	Metagenome	167	Y
F042076	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10557011	F036974	N/A	MNDPFKLEFWDNFNDSLYFDYLLKREEMLNTYRITYKQYAGSDTSAPVSYATKQIKAYNKHDAINAFNLWKGLIIKVEICD
Ga0209337_10557013	F042076	GGA	MKGEIEIFKNEDDIVEFGIQDTSFRVCIETETYWQEEAVSFNGFTDEIQYEEHEQTTTFVRMDTLECTGTMYYSKQDICSELERMLNEHN
Ga0209337_10557014	F037984	N/A	MNRKETLELLIEIQEAIEHFETRIDNAEWSNGFGIGLEFPNIREKNEHNIIIYGMCIGRLNERFTKQLNKLK